STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sybuSyntabulin (syntaxin-interacting). (654 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
    
 0.786
LOC101171064
Growth differentiation factor 6a.
      
 0.690
LOC101160447
RAN binding protein 2.
    
 0.658
cnot11
CCR4-NOT transcription complex, subunit 11.
      
 0.589
vrtn
Vertebrae development associated.
     
 0.563
ipo7
Importin 7.
    
 0.559
abi2
Uncharacterized protein.
    
 0.522
RSPH1
Radial spoke head component 1.
    
 0.492
grip1
Glutamate receptor interacting protein 1.
    
 0.484
Tep1
Uncharacterized protein.
   
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.