STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttll6Tubulin tyrosine ligase-like family, member 6. (783 aa)    
Predicted Functional Partners:
snx11
PX domain-containing protein.
      
 0.719
cdk5rap3
CDK5 regulatory subunit associated protein 3.
      
 0.693
NFE2L1
Nuclear factor, erythroid 2 like 1.
      
 0.625
cep41
Centrosomal protein 41.
      
 0.565
CBX1
Uncharacterized protein.
      
 0.562
CBX1-2
Chromobox homolog 1b (HP1 beta homolog Drosophila).
      
 0.562
cbx5
Chromobox homolog 5 (HP1 alpha homolog, Drosophila).
      
 0.519
hoxD4b
HoxD4b.
      
 0.506
LOC101164012
Homeobox B6b.
      
 0.505
Ttll5
Uncharacterized protein.
   
  
 0.476
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.