STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmod1Tropomodulin 1. (383 aa)    
Predicted Functional Partners:
H2M122_ORYLA
Uncharacterized protein.
   
 0.746
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.736
ENSORLP00000038844
Uncharacterized protein.
   
 0.609
LOC101155449
Uncharacterized protein.
   
 
 0.527
LOC101164086
Actinin, alpha 2b.
   
 
 0.527
actn3
Actinin alpha 3b.
   
 
 0.527
actn1
Actinin, alpha 1.
   
 
 0.527
H2LQV6_ORYLA
Uncharacterized protein.
   
 
 0.522
H2MTE5_ORYLA
Myosin, light chain 13.
   
 
 0.522
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.