STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
commd1Copper metabolism (Murr1) domain containing 1. (190 aa)    
Predicted Functional Partners:
ccdc22
Coiled-coil domain containing 22.
    
 0.968
commd6
COMM domain containing 6.
   
 0.967
commd2
COMM domain containing 2.
    
 0.948
commd4
COMM domain containing 4.
    
 0.935
cul2
Cullin 2; Belongs to the cullin family.
    
 0.933
COMMD10
COMM domain containing 10.
   
 0.932
LOC101158778
COMM domain containing 5.
    
 0.925
commd9
COMM domain containing 9.
    
 0.919
commd7
COMM domain containing 7.
    
 0.902
commd8
COMM domain containing 8.
    
 0.882
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.