STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrps36Mitochondrial ribosomal protein S36. (112 aa)    
Predicted Functional Partners:
mrps23
Mitochondrial ribosomal protein S23.
   
 
 0.846
mrps21
Mitochondrial ribosomal protein S21.
   
 0.811
Mrps27
Mitochondrial ribosomal protein S27.
     
 0.806
mrps15
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
 0.791
ptcd3
Pentatricopeptide repeat domain 3.
     
 0.783
dap3
Death associated protein 3.
    
 0.781
mrps18a
Mitochondrial ribosomal protein S18A.
   
 0.767
ENSORLP00000029432
Mitochondrial ribosomal protein S5.
     
 0.766
mrps35
Mitochondrial ribosomal protein S35.
   
 
 0.766
mrps10
Mitochondrial ribosomal protein S10.
   
 
 0.761
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.