STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174510Uncharacterized protein. (1242 aa)    
Predicted Functional Partners:
LOC101159906
RAB11B, member RAS oncogene family, b.
   
 0.971
LOC101160399
RAB11B, member RAS oncogene family, a.
   
 0.971
LOC101171030
RAB11a, member RAS oncogene family, like.
   
 0.971
LOC101158863
EH-domain containing 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.913
RAB11A
RAB11A, member RAS oncogene family.
   
 0.725
LOC101156358
Uncharacterized protein.
   
 0.725
rab11fip4
RAB11 family interacting protein 4 (class II) b.
    
 
 0.683
LOC101158957
RAB25, member RAS oncogene family a.
   
 0.679
rab25
RAB25, member RAS oncogene family b.
   
 0.674
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
 0.565
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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