STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175197Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (809 aa)    
Predicted Functional Partners:
supt20h
SPT20 homolog, SAGA complex component.
   
 0.952
LOC101156208
SH3-domain GRB2-like endophilin B1a.
     
 0.906
LOC101156861
BAR domain-containing protein.
     
 0.904
atg9a
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
  
  
 
0.902
becn1
Beclin 1.
    
 0.851
tmem208
Transmembrane protein 208.
    
   0.832
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.823
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
     
 0.821
ulk1
Unc-51 like autophagy activating kinase 1.
   
 
 0.798
LOC101167046
Unc-51 like autophagy activating kinase 1a.
   
 
 0.798
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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