STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arid4bTranslocase of outer mitochondrial membrane 20. (1289 aa)    
Predicted Functional Partners:
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.996
wdr73
Uncharacterized protein.
   
 0.990
rbbp4
Retinoblastoma binding protein 4.
   
 0.990
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.990
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 0.988
sap30l
Sap30-like.
    
 0.987
LOC101161599
BRMS1 like transcriptional repressor b.
   
 0.986
brms1
BRMS1 transcriptional repressor and anoikis regulator.
   
 0.985
brms1l
Uncharacterized protein.
   
 0.985
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 
 0.974
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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