STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf185LIM zinc-binding domain-containing protein. (1177 aa)    
Predicted Functional Partners:
grin3b
Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
  
   
 0.572
tmem234
Transmembrane protein 234.
      
 0.560
ubfd1
Ubiquitin family domain containing 1.
      
 0.559
LOC101163600
Uncharacterized protein.
      
 0.559
snrpd2
Small nuclear ribonucleoprotein Sm D2.
      
 0.514
ENSORLP00000031287
DUF4536 domain-containing protein.
      
 0.489
dvl3
Dishevelled segment polarity protein 3a.
    
 0.473
dvl2
Dishevelled segment polarity protein 2.
    
 0.473
dvl1
Dishevelled segment polarity protein 1a.
    
 0.473
SLC6A20
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
   
  
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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