STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kiaa0825Uncharacterized protein. (1347 aa)    
Predicted Functional Partners:
LOC101160277
Dynein light chain roadblock.
   
 0.905
dync2li1
Dynein, cytoplasmic 2, light intermediate chain 1.
   
 0.816
LOC101158002
Uncharacterized protein.
    
 
 0.803
DYNLT3
Uncharacterized protein.
    
 
 0.803
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
     
 0.694
LOC101171417
Dynein light chain.
    
 0.680
LOC101162462
Dynein light chain.
    
 0.680
LOC101174042
Dynein light chain.
    
 0.680
dnal4
Dynein light chain.
    
 0.680
ift172
Intraflagellar transport 172.
   
 
 0.661
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.