STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clasrpCLK4-associating serine/arginine rich protein. (704 aa)    
Predicted Functional Partners:
ccnl1
Cyclin L1a; Belongs to the cyclin family.
   
  
 0.599
gphn
Gephyrin b.
 
      0.594
GCC2
GRIP domain-containing protein.
      
 0.563
mrpl51
Mitochondrial ribosomal protein L51.
      
 0.559
cirbp
Cold inducible RNA binding protein b.
      
 0.485
LOC101156053
Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
 
      0.451
dab2
DAB adaptor protein 2.
    
 
 0.406
rfc5
Replication factor C (activator 1) 5.
   
 
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.