STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sepsecsO-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis. (479 aa)    
Predicted Functional Partners:
LOC101162447
Selenophosphate synthetase 2.
     
 0.972
sephs1
Selenophosphate synthetase 1.
     
 0.972
PSTK
Phosphoseryl-tRNA kinase.
     
 0.966
eefsec
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
      
 0.674
sars1
Seryl-tRNA synthetase.
     
 0.672
LOC101164345
tRNA selenocysteine 1 associated protein 1b.
      
 0.637
sars2
Seryl-tRNA synthetase 2, mitochondrial.
     
 0.623
RIMS2
Regulating synaptic membrane exocytosis 2.
     
 0.613
ENSORLP00000026521
Uncharacterized protein.
     
 0.613
ENSORLP00000034554
C2 domain-containing protein.
     
 0.613
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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