STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166751Si:ch73-127m5.2. (320 aa)    
Predicted Functional Partners:
dek
DEK proto-oncogene.
    
 0.531
LOC101169703
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.407
kctd2
Potassium channel tetramerization domain containing 2.
    
  0.407
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.407
kctd16
Potassium channel tetramerization domain containing 16b.
   
 0.403
H2LK11_ORYLA
BTB domain-containing protein.
   
 0.403
LOC101167549
Potassium channel tetramerization domain containing 16a.
   
 0.403
LOC101170105
Potassium channel tetramerisation domain containing 12b.
   
 0.403
Kctd12
Potassium channel tetramerisation domain containing 12.1.
   
 0.403
Kctd4
Potassium channel tetramerization domain containing 4.
   
 0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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