STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111947353Zinc finger and BTB domain containing 7a. (615 aa)    
Predicted Functional Partners:
naif1
Nuclear apoptosis inducing factor 1.
      
 0.568
terf2
HTH myb-type domain-containing protein.
    
 0.567
dclre1b
DNA cross-link repair 1B.
    
 
 0.552
srbd1
S1 RNA binding domain 1.
    
 
 0.533
LOC101167429
Uncharacterized protein.
    
 
 0.526
LOC101158397
Poly(rC) binding protein 3.
    
 
 0.526
nr2c2
Nuclear receptor subfamily 2, group C, member 2.
    
 0.524
LOC101164976
Nuclear receptor subfamily 2, group C, member 1.
    
 0.523
pias4
Protein inhibitor of activated STAT, 4a.
    
 0.521
LOC100301625
Forkhead box Q2.
    
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.