STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161055CTTNBP2 N-terminal like b. (609 aa)    
Predicted Functional Partners:
LOC110014886
MOB family member 4, phocein.
    
 
 0.900
pdcd10
Programmed cell death 10b.
    
 
 0.882
cct2
Uncharacterized protein.
    
   0.766
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
   0.766
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.764
tcp1
T-complex 1.
    
   0.762
strip1
Striatin interacting protein 1.
    
 
 0.733
LOC101159479
Striatin interacting protein 2.
    
 
 0.733
ppp2ca
Serine/threonine-protein phosphatase.
    
 
 0.679
ppp2cb
Serine/threonine-protein phosphatase.
    
 
 0.679
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.