STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam149b1Family with sequence similarity 149 member B1. (678 aa)    
Predicted Functional Partners:
gm2a
GM2 ganglioside activator.
    
 0.680
neu1
Sialidase 1.
  
 
 0.600
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
   
    0.592
tbc1d32
TBC1 domain family, member 32.
    
 
 0.582
amdhd2
N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
    
 0.542
dnajc9
DnaJ (Hsp40) homolog, subfamily C, member 9.
   
  
 0.486
gusb
Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.470
ctbs
Chitobiase, di-N-acetyl-; Belongs to the glycosyl hydrolase 18 family.
    
 0.464
LOC101158601
Chitinase, acidic.1; Belongs to the glycosyl hydrolase 18 family.
    
 0.464
LOC101158848
Chitinase, acidic.1; Belongs to the glycosyl hydrolase 18 family.
    
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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