nrm protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

nrm

Nurim. (277 aa)

Predicted Functional Partners:

c11h6orf136

0.558

suv39h1

0.486

gnl1

0.480

dhx16

0.474

dut

0.472

gtf2h4

0.457

tcf19

0.439

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
c11h6orf136	gnl1	ENSORLP00000013160	ENSORLP00000016112	Si:ch211-215a10.4.	Guanine nucleotide binding protein-like 1.	0.558
c11h6orf136	gtf2h4	ENSORLP00000013160	ENSORLP00000013420	Si:ch211-215a10.4.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.560
c11h6orf136	nrm	ENSORLP00000013160	ENSORLP00000043543	Si:ch211-215a10.4.	Nurim.	0.558
c11h6orf136	tcf19	ENSORLP00000013160	ENSORLP00000032214	Si:ch211-215a10.4.	Transcription factor 19 (SC1), like.	0.558
dhx16	gnl1	ENSORLP00000020005	ENSORLP00000016112	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	Guanine nucleotide binding protein-like 1.	0.542
dhx16	nrm	ENSORLP00000020005	ENSORLP00000043543	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	Nurim.	0.474
dhx16	tcf19	ENSORLP00000020005	ENSORLP00000032214	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	Transcription factor 19 (SC1), like.	0.402
dut	nrm	ENSORLP00000040902	ENSORLP00000043543	Deoxyuridine triphosphatase.	Nurim.	0.472
gnl1	c11h6orf136	ENSORLP00000016112	ENSORLP00000013160	Guanine nucleotide binding protein-like 1.	Si:ch211-215a10.4.	0.558
gnl1	dhx16	ENSORLP00000016112	ENSORLP00000020005	Guanine nucleotide binding protein-like 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.542
gnl1	gtf2h4	ENSORLP00000016112	ENSORLP00000013420	Guanine nucleotide binding protein-like 1.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.482
gnl1	nrm	ENSORLP00000016112	ENSORLP00000043543	Guanine nucleotide binding protein-like 1.	Nurim.	0.480
gnl1	tcf19	ENSORLP00000016112	ENSORLP00000032214	Guanine nucleotide binding protein-like 1.	Transcription factor 19 (SC1), like.	0.558
gtf2h4	c11h6orf136	ENSORLP00000013420	ENSORLP00000013160	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Si:ch211-215a10.4.	0.560
gtf2h4	gnl1	ENSORLP00000013420	ENSORLP00000016112	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Guanine nucleotide binding protein-like 1.	0.482
gtf2h4	nrm	ENSORLP00000013420	ENSORLP00000043543	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Nurim.	0.457
gtf2h4	tcf19	ENSORLP00000013420	ENSORLP00000032214	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Transcription factor 19 (SC1), like.	0.558
nrm	c11h6orf136	ENSORLP00000043543	ENSORLP00000013160	Nurim.	Si:ch211-215a10.4.	0.558
nrm	dhx16	ENSORLP00000043543	ENSORLP00000020005	Nurim.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.474
nrm	dut	ENSORLP00000043543	ENSORLP00000040902	Nurim.	Deoxyuridine triphosphatase.	0.472