STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw5tRNA-yW synthesizing protein 5. (330 aa)    
Predicted Functional Partners:
trmt12
tRNA methyltransferase 12 homolog.
 
    
 0.783
LOC101161427
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
      
 0.611
tyw3
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).
      
 0.604
JMJD8
Jumonji domain containing 8.
      
 0.558
LOC101165163
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.525
LOC101172602
Endothelial PAS domain protein 1b.
    
 0.525
Npas1
Neuronal PAS domain protein 1.
    
 0.525
NPAS3
Neuronal PAS domain protein 3.
    
 0.525
epas1
Uncharacterized protein.
    
 0.525
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.