STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbrd2LMBR1 domain containing 2b. (698 aa)    
Predicted Functional Partners:
capsl
Calcyphosine-like b.
 
 
  
 0.808
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.729
hmg20b
High mobility group 20B.
      
 0.714
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
  
 0.709
fam214a
Family with sequence similarity 214 member A.
      
 0.696
MEX3D
Mex-3 RNA binding family member D.
   
  
 0.661
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.635
acaa2
Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.624
gnb5
Guanine nucleotide binding protein (G protein), beta 5a.
      
 0.615
btbd2
BTB (POZ) domain containing 2b.
      
 0.613
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.