STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163390Uncharacterized protein. (537 aa)    
Predicted Functional Partners:
armc4
Armadillo repeat containing 4.
    
 
 0.854
ttc25
Tetratricopeptide repeat domain 25.
   
 0.750
ENSORLP00000034196
TPR_REGION domain-containing protein.
   
 0.750
efcab1
EF-hand calcium binding domain 1.
    
 0.720
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 0.718
cfap53
Uncharacterized protein.
   
 0.644
LOC101158689
Methyl-CpG binding domain protein 1b.
   
 0.639
pacrg
PARK2 co-regulated.
    
 
 0.637
tekt3
Tektin 3.
    
 
 0.632
ENSORLP00000042788
Dynein, axonemal, intermediate chain 1, paralog 2.
    
 
 0.629
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.