STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
casc3Casc3 exon junction complex subunit. (721 aa)    
Predicted Functional Partners:
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
eif4a3
Eukaryotic translation initiation factor 4A3.
    
 0.997
LOC101167611
Mago homolog, exon junction complex subunit.
    
 0.990
UPF1
UPF1 RNA helicase and ATPase.
    
 0.979
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.961
LOC101160447
RAN binding protein 2.
    
  0.958
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.949
LOC101167578
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.932
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.846
slu7
SLU7 homolog, splicing factor.
    
  0.841
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.