STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155571-4Histone H2B 1/2. (124 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.898
H3-3B
Histone H3; Belongs to the histone H3 family.
 
 
 0.857
H2LD49_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.845
LOC101159638
Histone H3; Belongs to the histone H3 family.
 
 
 0.841
H2L747_ORYLA
Histone H2A; Belongs to the histone H2A family.
 
 0.827
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
 
 
 0.825
H3-2
Histone H3; Belongs to the histone H3 family.
 
 
 0.818
LOC101163693
Histone H3.3.
 
 
 0.814
LOC101175183
Histone H3.3.
 
 
 0.814
H2L5K1_ORYLA
Histone H3; Belongs to the histone H3 family.
 
 
 0.811
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.