STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170891Tripartite motif containing 105. (434 aa)    
Predicted Functional Partners:
man2b2
Alpha-mannosidase.
      
 0.582
LOC101168962
Guanine nucleotide binding protein (G protein), alpha 14a.
   
  
 0.573
LOC101174997
GLOBIN domain-containing protein; Belongs to the globin family.
      
 0.517
gb
Hemoglobin embryonic subunit alpha; Involved in oxygen transport from gills to the various peripheral tissues.
      
 0.517
LOC101175238
GLOBIN domain-containing protein; Belongs to the globin family.
      
 0.517
LOC101170468
Zgc:163057; Belongs to the globin family.
      
 0.516
LOC101160356
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
      
 0.512
rps26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
    
 
 0.506
ubc
Ubiquitin B.
   
  0.420
p2rx2
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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