STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d22aTBC1 domain family, member 22a. (598 aa)    
Predicted Functional Partners:
Mrps6
Mitochondrial ribosomal protein S6.
    
   0.672
MRPL21
Mitochondrial ribosomal protein L21.
    
 
 0.565
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.565
mrpl41
Uncharacterized protein.
   
   0.560
mrpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.558
mrps35
Mitochondrial ribosomal protein S35.
    
   0.555
LOC101161080
Uncharacterized protein.
    
 
 0.552
LOC101162421
RAB1A, member RAS oncogene family a.
    
 
 0.552
LOC101173484
Zgc:171927.
    
 
 0.552
dap3
Death associated protein 3.
    
   0.547
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.