STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efemp2EGF containing fibulin extracellular matrix protein 2a. (523 aa)    
Predicted Functional Partners:
fkbp10
Peptidylprolyl isomerase.
   
 0.670
atoh8
BHLH domain-containing protein.
      
 0.564
lamc1
Uncharacterized protein.
    
 0.548
LOC101167732
Microfibril associated protein 5.
   
 
 0.546
vgll3
Vestigial-like family member 3.
   
  
 0.545
Col24a1
LAM_G_DOMAIN domain-containing protein.
    
 0.531
timp3
NTR domain-containing protein.
   
  
 0.530
col6a1
Collagen, type VI, alpha 1.
   
 0.524
LOC105354657
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
   
  
 0.516
LOC101162553
Collagen, type VI, alpha 2.
   
 0.512
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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