STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM20RNA binding motif protein 20. (838 aa)    
Predicted Functional Partners:
smc1b
Structural maintenance of chromosomes protein.
   
 0.956
smc1a
Structural maintenance of chromosomes protein.
   
 0.956
pds5b
PDS5 cohesin associated factor B.
   
 0.945
pds5a
PDS5 cohesin associated factor A.
   
 0.945
nipbl
Nipped-B protein.
   
 0.941
LOC101156754
Nipped-B protein.
   
 0.941
esco2
Uncharacterized protein.
   
 0.922
LOC101163936
Uncharacterized protein.
   
 0.922
Ncapd2
Uncharacterized protein.
   
 0.913
ncapg
Non-SMC condensin I complex, subunit G.
   
 0.902
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.