STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plekhs1PH domain-containing protein. (420 aa)    
Predicted Functional Partners:
LOC101164709
RNA binding protein, mRNA processing factor 2b.
      
 0.560
wdr74
WD repeat domain 74.
      
 0.558
nhlrc2
NHL repeat containing 2.
      
 0.489
ccdc186
Si:ch211-225b10.4.
      
 0.489
zdhhc6
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.489
LOC101166010
Tectorin beta.
      
 0.489
leprotl1
Leptin receptor overlapping transcript like 1.
      
 0.483
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.459
dclre1a
C2H2-type domain-containing protein.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.