STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcorBCL6 corepressor. (1802 aa)    
Predicted Functional Partners:
pcgf6
Polycomb group ring finger 6.
    
 0.805
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.681
LOC101157565
Uncharacterized protein.
    
 0.662
bcl6b
BCL6B transcription repressor.
    
 0.662
bcl6
BCL6A transcription repressor a.
    
 0.662
mllt1
MLLT1 super elongation complex subunit a.
    
 
 0.650
mllt3
MLLT3 super elongation complex subunit.
    
 
 0.650
rnf2
Ring finger protein 2.
    
 0.556
RING1
Ring finger protein 1.
    
 0.556
kdm2a
Lysine (K)-specific demethylase 2Ab.
   
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.