cfap221 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cfap221

Uncharacterized protein. (825 aa)

Predicted Functional Partners:

lrguk

0.817

spag17

0.667

ccdc189

0.592

H2N0U4_ORYLA

0.587

cfap69

0.581

polr3c

0.581

spag6

0.523

wdr93

0.519

ZNF830

0.489

H2LMZ3_ORYLA

0.482

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LMZ3_ORYLA	ccdc189	ENSORLP00000007416	ENSORLP00000038467	Uncharacterized protein.	Uncharacterized protein.	0.427
H2LMZ3_ORYLA	cfap221	ENSORLP00000007416	ENSORLP00000044782	Uncharacterized protein.	Uncharacterized protein.	0.482
H2LMZ3_ORYLA	lrguk	ENSORLP00000007416	ENSORLP00000031908	Uncharacterized protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.567
H2LMZ3_ORYLA	spag17	ENSORLP00000007416	ENSORLP00000006641	Uncharacterized protein.	Uncharacterized protein.	0.450
H2LMZ3_ORYLA	spag6	ENSORLP00000007416	ENSORLP00000009038	Uncharacterized protein.	Sperm associated antigen 6.	0.422
H2N0U4_ORYLA	ccdc189	ENSORLP00000025020	ENSORLP00000038467	Dpy-30 histone methyltransferase complex regulatory subunit.	Uncharacterized protein.	0.806
H2N0U4_ORYLA	cfap221	ENSORLP00000025020	ENSORLP00000044782	Dpy-30 histone methyltransferase complex regulatory subunit.	Uncharacterized protein.	0.587
H2N0U4_ORYLA	cfap69	ENSORLP00000025020	ENSORLP00000009672	Dpy-30 histone methyltransferase complex regulatory subunit.	Uncharacterized protein.	0.581
H2N0U4_ORYLA	lrguk	ENSORLP00000025020	ENSORLP00000031908	Dpy-30 histone methyltransferase complex regulatory subunit.	Leucine-rich repeats and guanylate kinase domain containing.	0.876
H2N0U4_ORYLA	polr3c	ENSORLP00000025020	ENSORLP00000012708	Dpy-30 histone methyltransferase complex regulatory subunit.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.581
H2N0U4_ORYLA	spag17	ENSORLP00000025020	ENSORLP00000006641	Dpy-30 histone methyltransferase complex regulatory subunit.	Uncharacterized protein.	0.736
H2N0U4_ORYLA	spag6	ENSORLP00000025020	ENSORLP00000009038	Dpy-30 histone methyltransferase complex regulatory subunit.	Sperm associated antigen 6.	0.545
ZNF830	cfap221	ENSORLP00000021679	ENSORLP00000044782	Zinc finger protein 830.	Uncharacterized protein.	0.489
ccdc189	H2LMZ3_ORYLA	ENSORLP00000038467	ENSORLP00000007416	Uncharacterized protein.	Uncharacterized protein.	0.427
ccdc189	H2N0U4_ORYLA	ENSORLP00000038467	ENSORLP00000025020	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.806
ccdc189	cfap221	ENSORLP00000038467	ENSORLP00000044782	Uncharacterized protein.	Uncharacterized protein.	0.592
ccdc189	cfap69	ENSORLP00000038467	ENSORLP00000009672	Uncharacterized protein.	Uncharacterized protein.	0.581
ccdc189	lrguk	ENSORLP00000038467	ENSORLP00000031908	Uncharacterized protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.837
ccdc189	polr3c	ENSORLP00000038467	ENSORLP00000012708	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.581
ccdc189	spag17	ENSORLP00000038467	ENSORLP00000006641	Uncharacterized protein.	Uncharacterized protein.	0.694