STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou6f1POU domain protein. (639 aa)    
Predicted Functional Partners:
snapc4
Small nuclear RNA activating complex, polypeptide 4.
    
  0.456
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
     
 0.450
gtf2b
General transcription factor IIB.
    
 0.435
nkx6-3
NK6 homeobox 3.
      
 0.433
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.432
irx2
Iroquois homeobox 2a.
      
 0.427
LOC101159038
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.417
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
  0.411
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
     
 0.405
sox18
Uncharacterized protein.
    
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.