STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158999Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (586 aa)    
Predicted Functional Partners:
cth
Cystathionase (cystathionine gamma-lyase), like.
 0.997
ahcy
Adenosylhomocysteinase; Belongs to the adenosylhomocysteinase family.
  
 0.956
AHCYL1
Adenosylhomocysteinase like 1; Belongs to the adenosylhomocysteinase family.
  
 0.952
ahcyl1
Adenosylhomocysteinase-like 1; Belongs to the adenosylhomocysteinase family.
  
 0.952
LOC101173464
AdoHcyase_NAD domain-containing protein; Belongs to the adenosylhomocysteinase family.
  
 0.952
AHCYL2
Adenosylhomocysteinase-like 2; Belongs to the adenosylhomocysteinase family.
  
 0.952
psph
Phosphoserine phosphatase.
    
 0.950
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.948
LOC101173474
Serine dehydratase.
  
 
 0.944
LOC101160387
Serine dehydratase-like.
  
 
 0.944
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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