STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160153Membrane-associated ring finger (C3HC4) 2. (298 aa)    
Predicted Functional Partners:
LOC101172966
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.737
LOC101160348
Membrane-associated ring finger (C3HC4) 11.
      
 0.561
vamp4
Vesicle-associated membrane protein 4.
    
 
 0.531
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
    
 
 0.524
LOC101170279
Adrenoceptor beta 2, surface a.
    
 
 0.522
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
  
 0.518
eea1
Early endosome antigen 1.
     
 0.517
LOC101159524
G_PROTEIN_RECEP_F1_2 domain-containing protein.
    
 
 0.510
H2M6Y0_ORYLA
Adrenoceptor beta 3a; Belongs to the G-protein coupled receptor 1 family.
    
 
 0.506
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.486
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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