STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175583Tripartite motif containing 3a. (771 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
   
  0.714
rps27a
Ribosomal protein S27a.
    
  0.666
LOC101175336
ADP-ribosylation factor interacting protein 2a.
      
 0.583
LOC101169381
ADP-ribosylation factor interacting protein 2b.
      
 0.583
LOC101175097
Dachsous cadherin-related 1a.
      
 0.582
fkbpl
TPR_REGION domain-containing protein.
    
 0.582
trpc4
Transient receptor potential cation channel, subfamily C, member 4a; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.576
LOC101154885
Transient receptor potential cation channel subfamily C member 4; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.576
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.569
LHFPL6
LHFPL tetraspan subfamily member 6.
   
  
 0.523
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.