STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fat3FAT atypical cadherin 3a. (4612 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box kinase 1.
   
 
 0.657
LIX1L
Limb and CNS expressed 1 like.
   
 0.643
LOC101175409
Limb and CNS expressed 1.
   
 0.633
LOC101175558
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.557
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.557
atn1
Atrophin 1.
    
 0.557
H2LIE7_ORYLA
Uncharacterized protein.
  
 
0.477
ENSORLP00000045894
Uncharacterized protein.
   
 
0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.