STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000045226Uncharacterized protein. (563 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.833
wdr73
Uncharacterized protein.
    
 0.619
rbbp4
Retinoblastoma binding protein 4.
    
 0.619
LOC101156710
Retinoblastoma binding protein 4, like.
    
 0.619
med14
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.594
ino80d
INO80 complex subunit Da.
    
 0.546
med12
Mediator complex subunit 12.
    
 0.546
rps27a
Ribosomal protein S27a.
    
 0.523
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.490
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
  0.490
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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