STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmod2Leiomodin 2 (cardiac) b. (547 aa)    
Predicted Functional Partners:
LOC101166499
Profilin; Belongs to the profilin family.
      
 0.634
LOC101161232
Profilin; Belongs to the profilin family.
      
 0.597
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 
 0.595
LOC101164501
ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.
      
 0.584
LOC101159957
Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.
      
 0.584
cfl1
Cofilin 1; Belongs to the actin-binding proteins ADF family.
      
 0.583
LOC101170393
Myozenin 2b.
   
  
 0.520
LOC101165521
Myozenin 2a.
   
  
 0.520
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
  
 0.514
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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