STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100301602Fork-head domain-containing protein. (345 aa)    
Predicted Functional Partners:
nrip1
Nuclear receptor interacting protein 1b.
     
 0.627
pgr
Uncharacterized protein.
    
 0.621
gata2
Transcription factor GATA-2.
    
 0.615
LOC101161391
GATA binding protein 2a.
    
 0.615
gata3
Uncharacterized protein.
    
 0.615
gata6
GATA binding protein 6.
    
 0.583
gata4
GATA binding protein 4.
    
 0.565
LOC101160197
E1A binding protein p300 a.
     
 0.560
LOC101168870
E1A binding protein p300 b.
     
 0.560
gata5
GATA binding protein 5.
    
 0.552
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.