STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata-1Hematopietic transcription factor GATA-1. (417 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.983
zfpm1
Zinc finger protein, FOG family member 1.
   
 0.945
LOC101174459
T-cell acute lymphocytic leukemia 1.
   
 0.895
H2MFW7_ORYLA
BHLH domain-containing protein.
   
 0.857
nkx2-5
Homeobox domain-containing protein.
   
 0.838
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.778
LOC101173202
RUNX family transcription factor 1.
    
 0.767
myb
Uncharacterized protein.
   
 0.756
LOC101160197
E1A binding protein p300 a.
    
 0.746
LOC101168870
E1A binding protein p300 b.
    
 0.746
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.