STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165174Calcium channel, voltage-dependent, gamma subunit 8b. (414 aa)    
Predicted Functional Partners:
LOC101171999
Glutamate ionotropic receptor AMPA type subunit 3.
    
 0.832
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
    
 0.832
LOC101163507
Glutamate receptor, ionotropic, AMPA 4a.
    
 0.832
LOC101175340
Uncharacterized protein.
    
 0.832
gria2
Uncharacterized protein.
    
 0.832
LOC101164162
Glutamate receptor, ionotropic, AMPA 1a.
    
 0.832
LOC101167340
Uncharacterized protein.
    
 0.832
LOC101169945
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
LOC101171445
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
LOC101158483
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.