STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159324DM1 locus, WD repeat containing. (687 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
    
 0.951
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
   
 0.840
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
   
 0.840
LOC101161758
Ubiquitin carboxyl-terminal hydrolase.
   
 0.840
LOC101166884
Uncharacterized protein.
   
 0.808
sympk
Symplekin.
 
  
 0.753
usp1
Ubiquitin carboxyl-terminal hydrolase.
   
 0.743
usp38
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
   
 0.743
mad2l1
HORMA domain-containing protein.
   
 0.653
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.644
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.