STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
LOC101164920Voltage-dependent calcium channel gamma-7 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs). Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization. Shows specificity only for GRIA1 and GRIA2. Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily. (341 aa)    
Predicted Functional Partners:
LOC101169945
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
LOC101171445
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
LOC101158483
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
LOC101155811
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.789
ppp2ca
Serine/threonine-protein phosphatase.
   
 0.730
ppp2cb
Serine/threonine-protein phosphatase.
   
 0.730
gria2
Uncharacterized protein.
    
 0.719
LOC101172229
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1; Belongs to the protein kinase superfamily.
    
  0.690
LOC101171999
Glutamate ionotropic receptor AMPA type subunit 3.
    
 0.689
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.