STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC28Tetratricopeptide repeat domain 28. (2375 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
ENSORLP00000026162
TPR_REGION domain-containing protein.
 
      0.851
trap1
TNF receptor-associated protein 1.
   
 0.782
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 0.782
tsc1
TSC complex subunit 1b.
   
 0.782
ENSORLP00000031311
Uncharacterized protein.
   
 0.782
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.782
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 
 0.726
wdhd1
WD repeat and HMG-box DNA binding protein 1.
    
 
 0.678
H2LGJ7_ORYLA
Si:ch211-131k2.3.
   
 0.674
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.