STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plvapPlasmalemma vesicle associated protein b. (424 aa)    
Predicted Functional Partners:
LOC101171737
Nuclear receptor subfamily 2, group F, member 6b.
    
 0.700
nr2f1
Nuclear receptor subfamily 2, group F, member 1a.
    
 0.700
LOC101163031
Anoctamin.
 
    
 0.690
bola1
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.690
ano8
Anoctamin.
 
    
 0.690
fabp7
Brain-specific fatty acid binding protein; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
     
 0.690
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
LOC101168287
Colony stimulating factor 1b (macrophage).
  
    0.418
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.