STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx29Sorting nexin 29. (819 aa)    
Predicted Functional Partners:
snx21
Sorting nexin family member 21.
   
 0.581
snx15
Sorting nexin 15.
   
 0.521
snx19
Sorting nexin 19b.
   
 0.501
txndc11
Thioredoxin domain containing 11.
      
 0.491
plekhf2
Pleckstrin homology domain containing, family F (with FYVE domain) member 2.
    
 
 0.488
COG5
Component of oligomeric golgi complex 5.
      
 0.487
zmat5
Zinc finger, matrin-type 5.
      
 0.485
uvrag
UV radiation resistance associated gene.
    
 
 0.463
msantd1
Myb/SANT-like DNA-binding domain containing 1.
      
 0.459
LOC101175016
Sorting nexin 19a.
   
 0.429
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.