STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169335Unc4.1 homeobox (C. elegans). (522 aa)    
Predicted Functional Partners:
lfng
Beta-1,3-N-acetylglucosaminyltransferase.
    
 
 0.578
LOC101175611
T-box transcription factor 18.
    
 
 0.569
mab21l2
Mab-21-like 2.
   
 
 0.562
pax1
Paired-box transcription factor pax1.
      
 0.559
hes7
BHLH domain-containing protein.
    
 
 0.530
LOC101157758
Acyl-CoA synthetase short chain family member 2.
      
 0.520
aadat
Aminoadipate aminotransferase.
      
 0.520
tbx15
T-box transcription factor 15.
    
 
 0.500
TBX6
T-box transcription factor 6.
    
 0.482
LOC101172782
Ripply transcriptional repressor 2.
      
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.