STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptprfProtein tyrosine phosphatase receptor type Fa. (1802 aa)    
Predicted Functional Partners:
lrrc4b
Leucine rich repeat containing 4Ba.
    
 0.938
LOC101159140
Leucine rich repeat containing 4Bb.
    
 0.938
LOC101166254
Tyrosine-protein kinase receptor.
    
 0.938
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.922
LOC101171502
Uncharacterized protein.
   
 0.910
LOC101165750
Si:ch211-284e13.4.
    
  0.909
irs2
Insulin receptor substrate 2b.
    
  0.909
LOC101163034
Si:ch73-335l21.1.
    
  0.909
LOC101174984
Insulin receptor substrate 2a.
    
  0.909
LOC101169068
Insulin receptor substrate 4a.
    
  0.909
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.