STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srrm1Serine/arginine repetitive matrix 1. (864 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.996
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.996
ALYREF
Aly/REF export factor.
    
 0.995
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.995
LOC110955119
Serine/arginine repetitive matrix 2.
   
 0.993
ccdc12
Coiled-coil domain containing 12.
     
 0.985
LOC110964394
RAN binding protein 2.
    
 0.984
slu7
SLU7 homolog, splicing factor.
     
 0.983
LOC110963232
RNA binding motif protein 25b.
   
 0.981
LOC110969183
RNA binding motif protein 25a.
   
 0.981
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.