Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rrbp1Ribosome binding protein 1a. (1128 aa)    
Predicted Functional Partners:
hdlbp
High density lipoprotein binding protein a.
   
 0.945
LOC110962293
High density lipoprotein binding protein b.
   
 0.945
LOC110972312
Centrosomal protein 120.
    
 0.893
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
 0.845
tmpo
Uncharacterized protein.
    
  0.813
ccdc191
Coiled-coil domain containing 191.
    
   0.801
LOC110964394
RAN binding protein 2.
   
 0.794
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.775
sec31a
SEC31 homolog A, COPII coat complex component.
   
 
 0.733
lmo7
LIM domain 7a.
   
 0.733
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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