ENSAPOP00000001005 protein (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPOP00000001005

annotation not available (94 aa)

Predicted Functional Partners:

MSL3

0.889

MSL2

0.813

LOC110972616

0.813

LOC110963494

0.804

LOC110955189

0.790

ENSAPOP00000010418

0.744

nxf1

0.744

ENSAPOP00000029921

0.744

NCSTN

0.734

LOC110965232

0.704

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000001005	ENSAPOP00000010418	ENSAPOP00000001005	ENSAPOP00000010418	annotation not available	Uncharacterized protein.	0.744
ENSAPOP00000001005	ENSAPOP00000029921	ENSAPOP00000001005	ENSAPOP00000029921	annotation not available	annotation not available	0.744
ENSAPOP00000001005	LOC110955189	ENSAPOP00000001005	ENSAPOP00000003981	annotation not available	Protein S100; Belongs to the S-100 family.	0.790
ENSAPOP00000001005	LOC110963494	ENSAPOP00000001005	ENSAPOP00000004863	annotation not available	Mastermind-like transcriptional coactivator 1.	0.804
ENSAPOP00000001005	LOC110965232	ENSAPOP00000001005	ENSAPOP00000006593	annotation not available	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.704
ENSAPOP00000001005	LOC110972616	ENSAPOP00000001005	ENSAPOP00000026390	annotation not available	MSL complex subunit 2.	0.813
ENSAPOP00000001005	MSL2	ENSAPOP00000001005	ENSAPOP00000009699	annotation not available	MSL complex subunit 2.	0.813
ENSAPOP00000001005	MSL3	ENSAPOP00000001005	ENSAPOP00000033585	annotation not available	MSL complex subunit 3.	0.889
ENSAPOP00000001005	NCSTN	ENSAPOP00000001005	ENSAPOP00000005612	annotation not available	Nicastrin.	0.734
ENSAPOP00000001005	nxf1	ENSAPOP00000001005	ENSAPOP00000013908	annotation not available	Zgc:153681.	0.744
ENSAPOP00000010418	ENSAPOP00000001005	ENSAPOP00000010418	ENSAPOP00000001005	Uncharacterized protein.	annotation not available	0.744
ENSAPOP00000029921	ENSAPOP00000001005	ENSAPOP00000029921	ENSAPOP00000001005	annotation not available	annotation not available	0.744
LOC110955189	ENSAPOP00000001005	ENSAPOP00000003981	ENSAPOP00000001005	Protein S100; Belongs to the S-100 family.	annotation not available	0.790
LOC110963494	ENSAPOP00000001005	ENSAPOP00000004863	ENSAPOP00000001005	Mastermind-like transcriptional coactivator 1.	annotation not available	0.804
LOC110965232	ENSAPOP00000001005	ENSAPOP00000006593	ENSAPOP00000001005	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	annotation not available	0.704
LOC110965232	NCSTN	ENSAPOP00000006593	ENSAPOP00000005612	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Nicastrin.	0.992
LOC110972616	ENSAPOP00000001005	ENSAPOP00000026390	ENSAPOP00000001005	MSL complex subunit 2.	annotation not available	0.813
LOC110972616	MSL3	ENSAPOP00000026390	ENSAPOP00000033585	MSL complex subunit 2.	MSL complex subunit 3.	0.983
MSL2	ENSAPOP00000001005	ENSAPOP00000009699	ENSAPOP00000001005	MSL complex subunit 2.	annotation not available	0.813
MSL2	MSL3	ENSAPOP00000009699	ENSAPOP00000033585	MSL complex subunit 2.	MSL complex subunit 3.	0.983