STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110958715Trio Rho guanine nucleotide exchange factor a. (2313 aa)    
Predicted Functional Partners:
LOC110969864
Rac family small GTPase 2.
    
 0.899
LOC110956736
Uncharacterized protein.
    
 0.899
LOC110966599
Rac family small GTPase 3b.
    
 0.899
RAC1
Rac family small GTPase 1.
    
 0.899
rhobtb2
Rho related BTB domain containing 2a.
    
 0.876
LOC110950248
Rho related BTB domain containing 4.
    
 0.876
CDC42
Cell division cycle 42.
    
 0.868
LOC110951271
Cell division cycle 42.
    
 0.868
ENSAPOP00000005758
Ras homolog gene family, member Gd.
    
 0.855
LOC110965833
Ras homolog family member Gb.
    
 0.855
Your Current Organism:
Acanthochromis polyacanthus
NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish
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